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How to Pay Myself With Freshbooks

How to Pay Myself With Freshbooks

Paying yourself as a business owner can seem complicated at first—but with the right approach and tools like FreshBooks, the process becomes straightforward and even empowering. This comprehensive guide will walk you through everything you need to know about paying yourself using FreshBooks, from understanding your business structure to implementing a sustainable payment strategy.

April 11, 2025

What Business Structure Do You Have?

Your business structure fundamentally determines how you should pay yourself. Different structures come with varying tax implications and payment options that directly impact your financial strategy.

Sole proprietorships and single-member Limited Liability Companies (LLCs) typically use owner's draws for compensation. This method allows you to withdraw funds directly from your business account, which reduces your equity in the company. You'll need to pay income tax on all profits regardless of how much you actually withdraw.

Partnerships and multi-member LLCs distribute profits according to predetermined agreements between owners. Each partner takes withdrawals based on their ownership percentage, with profits reported on individual tax returns rather than through the business entity itself.

Corporations, whether S Corporations (S Corps) or C Corporations (C Corps), usually compensate owners through formal salaries. S Corp owners who actively work in the business must receive "reasonable compensation" according to Internal Revenue Service (IRS) guidelines, while also having the option to take additional profit distributions. C Corps have more rigid compensation structures with automatic tax withholding.

Understanding these distinctions helps you not only decide on your payment method but also sets the foundation for effective tax planning and proper financial record-keeping.

Owner's Draw vs Salary: Which Works Better?

Choosing between an owner's draw and a formal salary represents one of the most significant decisions for business owners. Your choice affects both your personal finances and your business's financial health.

Owner's draws work particularly well for sole proprietors, single-member LLCs, and partnerships. This payment method allows you to withdraw funds directly from your business account without the formality of payroll processing. The flexibility of draws means you can adjust withdrawal amounts based on business performance—taking more during profitable periods and less during slower months. However, taxes aren't withheld automatically, so you must set aside money for quarterly estimated tax payments.

Salary payments make more sense for corporation owners. With this approach, you receive fixed, recurring payments similar to what you'd pay employees. Taxes get automatically deducted, including federal and state income taxes, Social Security, and Medicare. This provides stability for personal budgeting and simplifies tax preparation. The IRS expects your salary to reflect market rates for similar positions in your industry.

Many business owners actually combine both methods—taking a modest salary for stability while supplementing with owner's draws when profits allow. This hybrid approach offers both predictability and flexibility.

How Much Should You Pay Yourself?

Determining your compensation requires careful financial analysis and realistic planning. Your payment should balance personal needs with business sustainability.

Start by thoroughly analyzing your profit and loss statements. Calculate your monthly net profit after all business expenses have been deducted. Your compensation should come from this profit—not from total revenue. Ensure your business can cover all operating expenses like rent, supplies, employee payroll, and other obligations after paying yourself. Also factor in tax obligations, whether you're setting aside money for estimated tax payments with an owner's draw or having taxes automatically deducted from a salary.

Consider your true market value by evaluating your role comprehensively. Think about the range of responsibilities you handle, from management to marketing to operations. Research what someone with similar duties would earn working for another company. Factor in your personal living expenses and what you need to maintain your lifestyle comfortably.

Finding the right balance ensures you receive fair compensation while keeping your business financially healthy. Use FreshBooks' reporting tools to simulate different payment scenarios before making your final decision.

Creating Your Payroll Schedule

Establishing a consistent payroll schedule brings structure to your personal finances and business operations. Your chosen frequency affects both your personal budgeting and your business cash flow.

Monthly or bi-monthly payments work well for many small business owners. Paying yourself on the 15th and last day of each month creates predictability for personal budgeting while simplifying business accounting. This schedule aligns with many recurring business expenses, making cash flow management more straightforward.

Weekly or bi-weekly payments provide more frequent access to funds. This approach works particularly well for business owners who prefer steady cash flow for personal expenses. However, more frequent payments require more administrative attention and potentially more complex record-keeping.

Always check your state and local requirements regarding payroll frequency. Some jurisdictions have specific minimum frequency requirements that may affect your decision. FreshBooks Payroll, powered by Gusto, can help you navigate these requirements by automatically generating pay stubs, calculating taxes, and maintaining your chosen schedule.

Managing Payments with FreshBooks

FreshBooks offers powerful tools that streamline the process of paying yourself while maintaining accurate financial records. The platform integrates various financial functions into one cohesive system.

FreshBooks simplifies invoicing and expense tracking, giving you clear visibility into your business's financial health. The automated invoicing features help you create professional invoices that accurately reflect your income, while comprehensive expense management tools ensure you calculate your net profit correctly. This clarity prevents the common mistake of drawing money from revenue rather than actual profit.

The platform's payroll integration capabilities make salary payments straightforward. FreshBooks Payroll, powered by Gusto, handles all the complex calculations, tax deductions, and scheduling automatically. You can set up direct deposits to transfer money from your business account directly to your personal bank account on your scheduled payday without manual intervention.

FreshBooks also provides robust reporting features that give you insight into your business's financial performance. Profit and loss reports show available profits over time, cash flow analysis helps you understand the timing of money movements, and tax reports prepare you for quarterly or annual tax filing. These tools collectively ensure you make informed decisions about your compensation.

Best Practices for Sustainable Payments

Adopting strategic approaches to paying yourself creates long-term financial stability for both you and your business. These practices help you balance personal needs with business growth.

Always pay yourself from profits, not revenue. This fundamental principle ensures your business maintains adequate operating funds. Taking money from revenue before covering expenses can quickly deplete your resources and leave you vulnerable during slower periods. When you separate profits from expenses clearly, you also simplify tax preparation and avoid unpleasant surprises at year-end.

Consider reinvesting a portion of profits back into your business. Growing companies often need additional resources for marketing, product development, technology upgrades, or hiring. Creating a dedicated growth fund from a percentage of profits supports long-term success. Maintaining cash reserves also helps you weather unexpected challenges or seasonal fluctuations.

Maintain consistency in your payment schedule to benefit both personal and business planning. Predictable payments reduce financial stress and help you manage personal budgets more effectively. If you have employees, paying yourself on the same schedule adds professionalism to your business operations and simplifies overall payroll management.

Monitor your compensation strategy regularly and make adjustments as needed. Set quarterly review dates to examine your profit and loss statements and evaluate whether your current payment approach still makes sense. Consider consulting with an accountant periodically to ensure your compensation strategy remains tax-efficient and aligned with your business performance.

Tax Considerations for Business Owners

Understanding the tax implications of your payment method helps you avoid costly mistakes and maximize your take-home pay. Different payment approaches come with distinct tax responsibilities.

Owner's draws subject you to self-employment tax on all business profits. The IRS taxes your business's entire profit regardless of how much you actually withdraw. This means you must set aside money for quarterly estimated tax payments to avoid a large tax bill at year-end. FreshBooks helps by generating the reports you need for accurate tax form completion and tracking your tax obligations throughout the year.

Salary payments automatically handle tax withholding. Federal and state income taxes, Social Security, and Medicare taxes get deducted from each paycheck before you receive it. For S Corp owners, the IRS requires "reasonable compensation" based on industry standards for similar roles. FreshBooks Payroll can manage these deductions and help ensure compliance with tax regulations.

Maintaining detailed financial records protects you during potential audits. FreshBooks stores all invoices, receipts, and expense reports securely in the cloud, making your data accessible whenever needed. Regular reconciliation of bank statements, detailed payroll records, and comprehensive profit reports strengthen your position if tax authorities ever question your practices.

FreshBooks Implementation Step-by-Step

Setting up your payment system in FreshBooks requires several key actions. Following this process ensures you create a sustainable and compliant payment structure.

Before diving into the specific steps, take some time to gather your business information and clarify your payment goals. Having your business details, bank account information, and desired payment amount ready will make the setup process much smoother. Consider your business structure and financial situation carefully to determine which payment approach best suits your needs.

Account Setup

Begin by creating your FreshBooks account with complete business information. Enter all relevant details about your company, including your business name, address, and tax identification numbers. Connect your business bank account to enable seamless transfers and accurate financial tracking. This foundation ensures all subsequent payment activities link properly to your financial records.

Payment Model Selection

Choose whether you'll use owner's draws or formal salary based on your business structure. Update your accounting settings to reflect this decision, which affects how transactions appear in your financial reports. For owner's draws, you'll need to set up equity accounts correctly, while salary payments require proper expense categorization.

Profit Analysis

Review your profit and loss reports regularly to determine available funds for payment. FreshBooks generates comprehensive financial statements that show your net profit after all expenses. Use these reports to decide on a sustainable payment amount that rewards your work without compromising business stability.

Payroll Integration

Consider connecting FreshBooks with Gusto if you've chosen the salary approach. Follow the integration steps to automatically calculate, deduct, and record payroll taxes for your payments. This integration simplifies compliance with tax regulations and ensures accurate record-keeping for all salary-related transactions.

Direct Deposit Automation

Set up automatic transfers from your business account to your personal account. Configure direct deposit settings to move funds on your predetermined schedule without manual intervention. This automation reduces the risk of errors and saves valuable time that you can redirect toward growing your business.

Monitoring System

Establish a regular review process using FreshBooks reporting tools. Schedule time each month to examine your cash flow, profits, and expenses. Use these insights to adjust your payment strategy as needed to maintain financial health for both you and your business.

Benefits of Using FreshBooks for Payments

FreshBooks offers numerous advantages that make paying yourself simpler and more efficient. These benefits extend beyond basic payment processing to enhance your overall financial management.

The platform provides a unified accounting system that brings clarity to your finances. Instead of juggling multiple spreadsheets and manual calculations, you have one integrated platform that handles everything from invoicing to expense tracking and payroll. This comprehensive approach reduces errors and gives you confidence in your financial decisions.

Automation features dramatically reduce administrative work, freeing your time for more valuable activities. With payroll integrations and automated expense recording, you can focus on growing your business rather than getting bogged down by paperwork. These time savings translate directly into more productive hours for serving clients or developing new offerings.

FreshBooks excels at accurate record-keeping, which proves essential for tax compliance and business analysis. The platform generates detailed reports that help you review performance metrics at a glance. Having this information readily available makes tax season less stressful and provides insights for strategic planning throughout the year.

The user-friendly interface makes complex financial tasks accessible even without accounting expertise. Designed specifically for small business owners, FreshBooks minimizes the learning curve so you can quickly implement effective payment strategies. This accessibility ensures you actually use the tools rather than avoiding financial management due to complexity.

Long-Term Success Strategies

Maintaining a successful compensation approach requires ongoing attention and strategic thinking. These practical strategies help ensure your payment system remains effective as your business evolves.

Working with financial professionals provides valuable guidance tailored to your specific situation. Consider partnering with an accountant or financial advisor who understands small business finances. They can help you optimize the balance between owner's draws and salary while ensuring tax compliance and maximizing your take-home pay.

Planning for revenue fluctuations protects both you and your business during challenging periods. Most small businesses experience variable profits throughout the year. Build cash reserves during profitable months to support yourself during slower periods. Consider establishing a base payment amount that remains consistent, with additional compensation during particularly successful months.

The following practices will strengthen your financial foundation:

  1. Conduct quarterly reviews of your compensation strategy to ensure it still aligns with business performance and personal needs.
  2. Take full advantage of FreshBooks' automation features to minimize errors and save valuable time.
  3. Maintain transparent financial practices if you have employees to foster a healthy business culture.
  4. Separate personal and business finances completely to simplify accounting and strengthen legal protections.
  5. Create specific financial goals for both personal income and business growth to guide your payment decisions.

Implementing these strategies creates a sustainable approach to compensation that supports both your personal financial health and your business's long-term success.

Start Paying Yourself Confidently Today

Paying yourself represents a significant milestone in your entrepreneurial journey. With FreshBooks, this process becomes straightforward and manageable, allowing you to focus on what matters most—growing your business.

Understanding your business structure, choosing the right payment method, calculating appropriate amounts, and setting up consistent schedules creates a solid foundation for financial success. FreshBooks simplifies these tasks through intuitive tools that handle everything from profit analysis to payroll processing. The platform's automation features reduce administrative burdens while ensuring accurate record-keeping for tax compliance.

Remember that your compensation strategy should evolve as your business grows. Regularly review your financial reports, consult with professionals when needed, and adjust your approach to balance personal needs with business sustainability. By treating your own compensation as a crucial business function rather than an afterthought, you demonstrate the same professionalism that drives your client relationships and business operations.

Take the first step today by setting up your FreshBooks account, reviewing your profit and loss statements, and determining a payment approach that rewards your hard work while supporting your business's future. Your entrepreneurial efforts deserve fair compensation, and with the right tools and strategies, you can pay yourself confidently while building a thriving business.

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